Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs71525724 chr8:6185754 C/T 2.34E-5 497 22.37 23.93 7.72 KM Plot
LGG rs7152712 chr14:24419202 G/A 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs7152902 chr14:24419274 G/A 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs7153805 chr14:102193546 C/T 1.21E-14 502 21.7 26.58 5.4 KM Plot
LGG rs7153995 chr14:24411962 C/T 4.06E-5 508 23.58 21.15 16.63 KM Plot
LGG rs7156419 chr14:102189963 G/A 1.17E-14 504 21.83 27.6 5.4 KM Plot
LGG rs7156624 chr14:24416528 G/A 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs7158222 chr14:24416333 A/T 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs7185199 chr16:8714742 T/C 2.88E-9 509 8.17 18.8 24.03 KM Plot
LGG rs7185211 chr16:8714774 C/T 2.83E-9 509 24.05 18.43 8.17 KM Plot
LGG rs7188500 chr16:8714505 C/G 2.52E-9 509 24.03 18.43 9.93 KM Plot
LGG rs7189082 chr16:8714753 G/C 2.88E-9 509 8.17 18.8 24.03 KM Plot
LGG rs7194934 chr16:8714162 A/C 4.03E-9 502 8.17 18.93 23.93 KM Plot
LGG rs7195689 chr16:8714620 A/G 2.88E-9 509 8.17 18.8 24.03 KM Plot
LGG rs7197351 chr16:8709168 A/G 3.74E-5 509 11.7 17.32 24.05 KM Plot